rs51501151 SNP Detail

Summary

• ID
  rs51501151
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28798413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTTCCA TCTGCAGGTC
  AGTGTGCTGC AGGTGGTGTG GGGGAGGGGA GCACCTGCGC CCAGGTCCCG GGAGACGGAC
  CAGTGTCAGG AGATGACCTT GGCCCTTTGA ACGTGATCTG GAGTCTGACT CCCCTGAAAT
  CTCAGAGCCA GAGGCGGGTG GTTGATCTGC CCCCTCCCCT GCTCCTATTT CTCCCAGGAC
  K
  GGAACAAGGG GAGGATGGAG AGAGAGCAAA GGGTTGCCTA ACGTGGCGTC GCAAAGGCCC
  ATGGGATCCT ACCAGGCATT AGAGACTAGG AGCTGCGGGT AGCCAGAGCG GGGGGCGCCG
  GGCGGAGGAG GGTGGGGCAA CGGGGAGCAG CCTCGGAGTC CATCTGTCTG CCCCGCGCCC
  GCAGGGCCGG GCACCAGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146395059	ENSMUSSNP98066	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51501151					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28798413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Barhl1	BarH like homeobox 1			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi11393	CpG island 11393			within coordinates
Cpgi11394	CpG island 11394			598 bp proximal
Rr553925	regulatory region 553925			1598 bp distal
Rr553926	regulatory region 553926			929 bp proximal