rs51501256 SNP Detail

Summary

• ID
  rs51501256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:93270698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG ACCCGATTTC TTCGCGCCTT
  Y
  CCCCCCCCTC CACGCCCCAC TCCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144957770	ENSMUSSNP5011458	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss319843454	CHEV_1_95239553	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51501256					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:93270698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi598	CpG island 598	within coordinates
Pask	PAS domain containing serine/threonine kinase	within coordinates
Ppp1r7	protein phosphatase 1, regulatory subunit 7	652 bp upstream
Rr29849	regulatory region 29849	within coordinates
Rr366968	regulatory region 366968	14 bp downstream
Rr396176	regulatory region 396176	447 bp upstream
Tssr163	transcription start site region 163	706 bp upstream
Tssr8169	transcription start site region 8169	642 bp upstream
Tssr13015	transcription start site region 13015	404 bp upstream
Tssr13016	transcription start site region 13016	379 bp upstream
Tssr13017	transcription start site region 13017	356 bp upstream
Tssr13018	transcription start site region 13018	345 bp upstream
Tssr13019	transcription start site region 13019	173 bp upstream
Tssr13020	transcription start site region 13020	87 bp upstream
Tssr13021	transcription start site region 13021	65 bp upstream
Tssr13022	transcription start site region 13022	522 bp downstream