rs51502979 SNP Detail

Summary

• ID
  rs51502979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGGAAA TGAGGTATTT
  TAAAGGTAGA AGATGATACT TGGAAATATA TTTGTACTTA ATATTGTTTT AAAATTGCAC
  ATATGATATT AAGGGCAGCA GACATTTTAT GACCATGCAC TGTGTGTCTA GCATAATCCT
  AGGTGCAGGG TCATGGTAGG TGTGGAGTTG GATGCATCCT TGTCCCTCCT GGAGCTCTCC
  R
  GCATACATAA TGCCATGCAG TTGGGCAAGG TGATAAAATA TTCTTCTTTT AGCCGGGCAT
  GGTGGTGCAC ACCTTAAATC CCAGCACTTG GGAGGCAGAG GCAGGCAGAT CTCTGAGTTT
  GAGGCCAGCC TGGTCTACAG AGTGAGTTCC AGGACAGCCA GGGCTACACA GAGAAACCCT
  GTCTCGTAAA ACTATATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132717866	ENSMUSSNP5551400	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss323830643	CHEV_11_99915324	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51502979					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944836 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1895 bp downstream
Tssr104895	transcription start site region 104895	1745 bp downstream
Tssr104896	transcription start site region 104896	1718 bp downstream