rs51505028 SNP Detail

Summary

• ID
  rs51505028
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32180550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCCAGGA GCCTGCAGAA
  GGCGCTGGGT GCTCAGAGGC TAACTAATGT CTCCAATCAT CAACAAGTAG TCTTAAATAT
  TCCACTTAGA AGTGATTTCT TTCTAGAGAA GTCTCCTTTA GAGACCTAAA CAAGGTCAGT
  TGCATAGAAT GATACTTTAC TCTCCCTCCA CTGACTGAAA GCATCTGTCT ATACCTTGTA
  W
  AAGATGCAGG AGTGCATAGA TAATGTCTGT ATTAGTCAGG GTTCTCTAGA GTCACAGAAC
  TTATGGATAA TTTCTAAATA GTAAAGGAAT TTATTGATGA CTTACAGTCG GCAGCCCAAT
  TCCCAACAAT GGTTCAGTCG CAGCTGTGAA TGGAAGTCCA AGGATCTAGC AGTTACTCAG
  TCTCACGCAG CAAGCAGGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63246556	NES17481788	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		T	A	T	T		A
ss325792073	CHEV_19_32277640	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51505028					SNP	A	A	A	A	A	A	A	A	A	A	T	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63246556	NES17481788	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32180550 () rs orientation: forward

Symbol	Name	Function Class
Gm50210	predicted gene, 50210	1032 bp downstream
Rr546423	regulatory region 546423	650 bp distal
Rr546424	regulatory region 546424	172 bp distal
Sgms1	sphingomyelin synthase 1	within coordinates