rs51507159 SNP Detail

Summary

• ID
  rs51507159
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26750293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAC AAGGAGCACA TGTGGAGGCC
  R
  GAGGAAGACA GCTAATGTCT CTAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60554858	NES16569812	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	A		A	G	G	A		G
ss145405318	ENSMUSSNP5429638	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss325342253	CHEV_17_26668264	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51507159					SNP	G	G	G	G	G	G	G	A	G	G	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554858	NES16569812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26750293 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Rr329984	regulatory region 329984	1893 bp distal
Tssr143239	transcription start site region 143239	489 bp upstream
Tssr143240	transcription start site region 143240	1560 bp upstream
Tssr143241	transcription start site region 143241	1576 bp upstream
Tssr143242	transcription start site region 143242	1590 bp upstream
Tssr143243	transcription start site region 143243	1615 bp upstream
Tssr143244	transcription start site region 143244	1646 bp upstream
Tssr146959	transcription start site region 146959	363 bp downstream
Tssr146960	transcription start site region 146960	1295 bp downstream
Tssr146961	transcription start site region 146961	1318 bp downstream
Tssr146962	transcription start site region 146962	1346 bp downstream
Tssr146963	transcription start site region 146963	1391 bp downstream