rs51509363 SNP Detail

Summary

• ID
  rs51509363
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:139409865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTTCAG CAGGTGGCCA
  ATGAATGTGG AGAGGAAGCT GTTGCTTTTT CTCTCCAGAA AGTAGGATTT ATTTTATTTC
  TGTTCTTTTG GACACATTGA GGACAGTGAG CATCTATCTG TTTTCAACAA ATCCTGCATA
  GCTTAGTTTT AGACTTCTGA CTGGGCTGTG CTGTGGCACA GCATGTGTGA TAAAGTGGTT
  M
  CCACACAGAC ACTGTTGTAA TTACATAGTT GTCAGAAGGC TCTCGGTCAG TCTGGTAGAG
  CATAAACCAA CTTGACATTT ACAATTAATG CTTTGTGTCC ATTAATTGCA TATTAACTAT
  TACAATTAGT ATAACAATAA TTGCATAAGA TCTTTCTCAT TTGCAATTGT AGACCATTAT
  TGTAACCTTA TATTTCTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60809600	NES16481646	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51509363					SNP	A	A	A	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60809600	NES16481646	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:139409865 () rs orientation: forward

Symbol	Name	Function Class
Aspm	abnormal spindle microtubule assembly	within coordinates
Tssr235	transcription start site region 235	1395 bp upstream