GGAGGACGCC TCCCCAGCTC TGATTGCAGG CCGGCCCTTC CAGGCCCTGG CAGAGGCCCC CGGAGCGCGG GGGGTGGGGT GGGGTGGGAG CGGGGGTGTC Y TCGCCCCGGA GTCCCGTCCC CCAGGCTGGG GCAGCGGGTG CCACCACGCC TCTAGTCTTA GCAGAAATAT TTACCCCCTT TTCCTCTGCG CACAGGAAC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|
ss147486036 | ENSMUSSNP1027988 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | ||
ss320497835 | CHEV_2_125549346 | CHEVERUD | SCREENING_POP | f | SNP | T | C | |
SNP Consensus Information | ||||||||
SNP | Consensus Type | A/J |
LG/J |
SM/J |
||||
rs51510412 | SNP | C | T | C |
Location: Chr2:125565530 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi12200 | CpG island 12200 | within coordinates | ||||||
D2Mit398 | DNA segment, Chr 2, Massachusetts Institute of Technology 398 | 1984 bp proximal | ||||||
Rr367290 | regulatory region 367290 | 1019 bp upstream | ||||||
Rr564270 | regulatory region 564270 | within coordinates | ||||||
Rr564271 | regulatory region 564271 | 249 bp proximal | ||||||
Rr564272 | regulatory region 564272 | 1268 bp proximal | ||||||
Shc4 | SHC (Src homology 2 domain containing) family, member 4 | within coordinates | ||||||
Tssr26008 | transcription start site region 26008 | 73 bp upstream | ||||||
Tssr26009 | transcription start site region 26009 | 47 bp downstream | ||||||
Tssr26010 | transcription start site region 26010 | 97 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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