rs51510412 SNP Detail

Summary

• ID
  rs51510412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125565530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGACGCC TCCCCAGCTC TGATTGCAGG CCGGCCCTTC
  CAGGCCCTGG CAGAGGCCCC CGGAGCGCGG GGGGTGGGGT GGGGTGGGAG CGGGGGTGTC
  Y
  TCGCCCCGGA GTCCCGTCCC CCAGGCTGGG GCAGCGGGTG CCACCACGCC TCTAGTCTTA
  GCAGAAATAT TTACCCCCTT TTCCTCTGCG CACAGGAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147486036	ENSMUSSNP1027988	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320497835	CHEV_2_125549346	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51510412					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125565530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12200	CpG island 12200	within coordinates
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	1984 bp proximal
Rr367290	regulatory region 367290	1019 bp upstream
Rr564270	regulatory region 564270	within coordinates
Rr564271	regulatory region 564271	249 bp proximal
Rr564272	regulatory region 564272	1268 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	mRNA-UTR
Tssr26008	transcription start site region 26008	73 bp upstream
Tssr26009	transcription start site region 26009	47 bp downstream
Tssr26010	transcription start site region 26010	97 bp downstream