rs51510497 SNP Detail

Summary

• ID
  rs51510497
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55253298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTCGCC TCCACGGATC
  GAGGCAAACC GTTGGCACCA TGGATGATGA GAGTGATGAG AGTTGTCTCA GGGATGCGCT
  CACTCTGACA CAGCGGTATC GTATGTCAGA TGAGAGGGAG GGTCAGACGC TGCAGGTTGG
  CTGGTTCCGG ACAGGAGGCT AACCCCAAAT TACTCTTCAG AATGAGCTTT GTAGGGAGAG
  Y
  CTCGTGACCA TGGCGGGCGG TGACCCGGCC TTAAGGTGGG ACAATGTTCC GAGCAGAGCT
  AGCGTCACAT GTACAATGTG GCTGGGGCAA AGGCAGCCGT AAAGTTTGGC GATGAAATCT
  CCGGTCTTTT CCAGTAAATT GGGGGGGGTG TGGTGGGAGG AGACTGGCTG TGTGCCGAGG
  CTGCCTGCCC CTGTGCGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52722744	NES15566835	PERLEGEN	MM_PANEL2	f	SNP			T	C	T	T	C	T	T	C
ss139575844	ENSMUSSNP2596229	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs51510497					SNP	C	C	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722744	NES15566835	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55253298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	within coordinates
Gm63347	predicted gene, 63347	40 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	647 bp downstream
Rr369831	regulatory region 369831	218 bp downstream
Rr404108	regulatory region 404108	1419 bp downstream
Rr492392	regulatory region 492392	377 bp distal
Rr492393	regulatory region 492393	674 bp distal
Rr492394	regulatory region 492394	51 bp distal
Rr492395	regulatory region 492395	within coordinates
Rr492396	regulatory region 492396	317 bp proximal
Tssr125743	transcription start site region 125743	270 bp downstream