rs51510867 SNP Detail

Summary

• ID
  rs51510867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78355802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTGGGCC GCAGCGTCCC
  TCGGCAGACG GCTGCCTTTG CGTCGCCTCC GCAGCGACAG CGCGGCGCCC TGCACCCCGC
  ACTTCGACGT GGTAGTTATC GGAGGAGGGC ACGCGGGGAC CGAGGCGGCC GCCGCCGCCG
  CTCGCTGTGG CTCGCGGACC CTGCTTCTCA CGCACCGCGT GGACACGATC GGTGAGGAGC
  Y
  CCGCGGCCGC GGCGGGAACT CTACGTCCGA CCGAGCGCGG GCAGGGTTGC GGTGGACCGG
  AGTGGCCGGT GCCCGGGGTC AGGGAGCGGA GGACTGAAAG CCACGGCGGC TGCTGGGCAG
  GTCGCTGGGT TGACCCTCCC CGTATTGTCA TCTCAGAGAA ATCCCGAGTT AACATTTTCA
  CACCCGTCTT GTTAAGCGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss61427216	NES16810960	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs51510867					SNP	T	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427216	NES16810960	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78355802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	within coordinates
Gm17324	predicted gene, 17324	within coordinates
Mto1	mitochondrial tRNA translation optimization 1	within coordinates
Rr401544	regulatory region 401544	183 bp downstream
Rr683554	regulatory region 683554	302 bp distal
Rr683555	regulatory region 683555	256 bp proximal
Tssr86287	transcription start site region 86287	292 bp downstream