rs51513765 SNP Detail

Summary

• ID
  rs51513765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATATAGT TGGAAGGTGA
  TAAATTTTTA AACCTATTTA TTCATTAGTT TCTGGGGAGA GGGTGAGTTG GGAACTAGCT
  ACATCCCACC CACACAGTGA AAGAGACTGG GGATAAGGGG TGGGGGTGGG GACAAATAGA
  TGCAGTCGGA TGGCTTTCAT GGAAGGAGTG TGCATGTTCA CATCATTTTT TTGTAAGCAC
  Y
  GAGGAGAGTA GAACAGCTGT TATTTAGGTT TCAGTGTTTG TAAACTGTAT GTACAACATT
  TTTGATGCTG GATTTCAATG TAATGTTGTG AGTAACCCTT GGACATTTTA TGTCTTCCTC
  GTAAGGCACA GTGCCTTGCT TAGCAATTGT TTTGTCATGC CTTTTCGTGT CTTGAAGTGG
  ACACATTTAT TTATTCATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198245	NES16702748	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51513765					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198245	NES16702748	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053562 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Tssr47224	transcription start site region 47224	1994 bp downstream
Tssr47225	transcription start site region 47225	1892 bp downstream
Tssr47226	transcription start site region 47226	1823 bp downstream
Tssr47227	transcription start site region 47227	1629 bp downstream
Tssr47228	transcription start site region 47228	1566 bp downstream
Tssr47229	transcription start site region 47229	1545 bp downstream
Tssr47230	transcription start site region 47230	1520 bp downstream
Tssr47231	transcription start site region 47231	1490 bp downstream
Tssr47232	transcription start site region 47232	1343 bp downstream
Tssr47233	transcription start site region 47233	1293 bp downstream
Tssr47234	transcription start site region 47234	1258 bp downstream
Tssr47235	transcription start site region 47235	500 bp downstream
Tssr47236	transcription start site region 47236	461 bp downstream
Tssr47237	transcription start site region 47237	441 bp downstream
Tssr47238	transcription start site region 47238	382 bp downstream
Tssr47239	transcription start site region 47239	377 bp downstream
Tssr47240	transcription start site region 47240	358 bp downstream
Tssr47241	transcription start site region 47241	329 bp downstream
Tssr47242	transcription start site region 47242	304 bp downstream
Tssr47243	transcription start site region 47243	286 bp downstream
Tssr47244	transcription start site region 47244	247 bp downstream
Tssr47245	transcription start site region 47245	230 bp downstream
Tssr47246	transcription start site region 47246	176 bp downstream
Tssr47247	transcription start site region 47247	122 bp downstream
Tssr47248	transcription start site region 47248	63 bp downstream
Tssr47249	transcription start site region 47249	2 bp downstream
Tssr47250	transcription start site region 47250	127 bp upstream
Tssr47251	transcription start site region 47251	191 bp upstream
Tssr47252	transcription start site region 47252	243 bp upstream
Tssr51812	transcription start site region 51812	1476 bp upstream
Tssr51813	transcription start site region 51813	1459 bp upstream
Tssr51814	transcription start site region 51814	485 bp upstream
Tssr51815	transcription start site region 51815	439 bp upstream
Tssr51816	transcription start site region 51816	406 bp upstream