rs51514413 SNP Detail

Summary

• ID
  rs51514413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118532285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACGTTCTG AGCTCTGTCC
  TCTGACTTCC ACGCTTTAGC CTTGGCATGT ATATGTGGTC TTCACAGGTG TCATGTGTGC
  TATCCCTCAC TCCCACCCCA TCTCACGCAC ACAAATGTAA AAAGAAAAAA AAAACTTTTG
  TTGAACAGAA CTGAGCCACT GATCTGTCCA AGAAAAGCCC ACAAGAACAG GGCTCTAAGC
  R
  CTTTGGCCAT TCTGGAAAGT CACAGTTCTC CTTGAAATGG CTCTAGTATG TTTCATGGAG
  GGACTTGCAA GAGGATTTCA ATCAAGTTTC TGTGGCCCTG CTTGTAGGAA CAGTGCCCCT
  CCTGGCCTGG CAGGGTCTTG CACTGCTCAG TGCTGTCCTG GGCTGAGATC GCACCATGGG
  CTTCGTCTAC TCCCATTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61229490	NES16855716	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51514413					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61229490	NES16855716	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118532285 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688309	regulatory region 688309	1740 bp distal
Tssr87646	transcription start site region 87646	131 bp upstream
Tssr87647	transcription start site region 87647	158 bp upstream
Tssr87648	transcription start site region 87648	174 bp upstream
Tssr87649	transcription start site region 87649	218 bp upstream
Tssr87650	transcription start site region 87650	260 bp upstream
Tssr87651	transcription start site region 87651	278 bp upstream
Tssr87652	transcription start site region 87652	555 bp upstream
Tssr91958	transcription start site region 91958	1348 bp upstream