rs51515543 SNP Detail

Summary

• ID
  rs51515543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:29222460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCTACAG TGTACTTACA
  TATAATAAAT AAATAAATCT TAAAAAAAAA GAATCCCATG AAGCAGGTGC CACTTCTCAC
  AATGCATGTA AATGACTCAG TCAAGGCTCA TGGGAATAAT GGTTCACATG TGATGAAGGC
  ACCAGGTAGA GCTAGGGCTC AAGTACACAT CTGCTCTGGT ACCTTTGCTG GGATTACAAG
  R
  ACAACCAGGA ATGTCTGGAC CATGGAGGGG GGCCTGCATA CTACATATTG TATATCATAT
  AATATATGGT ATATAAATAT ATTATATATT ACTTATTTAT ATATTAATTA TATTCTTTAT
  CATCTATCAT ATTTATATAT TGTATAGTAC CTTGTATGTG ATATATTGCA TATCATATAT
  ATTATATACT ATATATTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62195797	NES17191627	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51515543					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62195797	NES17191627	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:29222460 () rs orientation: forward

Symbol	Name	Function Class
Cacna2d3	calcium channel, voltage-dependent, alpha2/delta subunit 3	within coordinates
Tssr127822	transcription start site region 127822	536 bp downstream