rs51515983 SNP Detail

Summary

• ID
  rs51515983
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:60384311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCTCAG GAGCCAAGTC
  AGCTCTAAAC TGCTACATTC TAGTCAGACT TGCCATTTGC CTTGGTTTTC TGATTGTTAC
  ATCATTGCTA CAAAATGGTA ACTTTTGTTT TGATTACAGA ATAAAATGTA GATACTGAGA
  ACTTCACAAA GCAAGTGCAT GGCTTATGAA CCCCTCTAAA GGAGCATCTT TGCTGACACC
  Y
  GCCTTAGATC AACTTCTCTG CATCACTCAT TCCATGGAGG TTTCATCCCC TTGGACCAGT
  CACATTTCCC TCTCAGTCTG TTAGTAGTCA CTGACACACT AACCACATGC CCGGCCCTCC
  TACAGTCCAC AAGACACCGT AGAAACCGTA TGTTAAAACC ATTGAAATTG GTTTTTGGTT
  TTGTTGCATT AGGGATGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52501569	NES15579511	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51515983					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52501569	NES15579511	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:60384311 () rs orientation: forward

Symbol	Name	Function Class
Rr389731	regulatory region 389731	997 bp downstream
Rr389732	regulatory region 389732	1711 bp upstream