rs51516510 SNP Detail

Summary

• ID
  rs51516510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34573679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTCATCCT GAGTAACACT GAAAGTATGG ACGGTGGGTG
  AGAGGGCTCC ATGGATAAAG CCCTGCTGTG TTAAGCCCAG TGACCCATTC AGAGCCTTGG
  R
  ACCCATGGAA ATAAAATTAA AATGTAAATA TGTTACAGAA GGTATGCTGG GGCCAGCCAG
  ATGGCTCAGT GGAGAAAGGG GCTGATAAAG GAAGGTGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60592252	NES16320184	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	A	G	A	A		A	A	A	A		A
ss149092880	ENSMUSSNP1548727	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss322575037	CHEV_8_35169579	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51516510					SNP	G	G	G	G	G	A	G	A	G	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592252	NES16320184	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34573679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	1590 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	1821 bp upstream
Tssr80889	transcription start site region 80889	1237 bp downstream
Tssr80890	transcription start site region 80890	1291 bp downstream
Tssr80891	transcription start site region 80891	1918 bp downstream
Tssr80892	transcription start site region 80892	1986 bp downstream