rs51517622 SNP Detail

Summary

• ID
  rs51517622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90492078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCTGAC AAAGGCTTCT
  TTTGAGTTTA TTTCAAGTCC AGGCCACAGT ACATTTGTAG GCCACAGGAG AAGGTGCCAG
  AAGCAGCAAT GCTGAGAAGA CAGGCTTCTG GACCCCAGTG TGGCTGAGAC CTGAGGCTAA
  TTTGCTGGGC AGGTGGAGGT TGGTCTCAGC AGTAACTACC CTTGAGGACT CCTGGGGTCA
  Y
  TGGCGGTTGG AGCGCACAGG AGATCAACGC CACTAAATAG GTCATCTTTA AATCTTCTCC
  CCTCTCTTAT TCGTTGGGTG GGAACATTTC CGTGAGCCCT AACTTTCTTT TCTATCAAGT
  AGGGTGAGTT TTTCCACCTT CCGGGGGTTG TCTTCTGAGC TAGGTGGGAT AACCTATGGA
  AAGCACTTGG CACACAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424338	NES15923788	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51517622					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424338	NES15923788	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90492078 () rs orientation: forward

Symbol	Name	Function Class
Rr854	regulatory region 854	within coordinates
Rr367471	regulatory region 367471	506 bp upstream
S100a3	S100 calcium binding protein A3	within coordinates