rs51517660 SNP Detail

Summary

• ID
  rs51517660
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138949517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATTAGGA ATAACACTAG
  TATTATTATT CCTTCCACAC CCCTTACTTC CCTTACCCGT GGTTGCTTTT CTGTCGTCCT
  TTCTCTAGTA AGGTTATGAC CTAGATACCT TTAAAAGTCC TGCAATGTCA GTTTACTTAA
  GTTCTTTCAT TGTCTCAAGG GCTTCTTAAT TTGTGAATTT TGTTCTTTCT GCTTTTTAAA
  W
  TAAACCAAGC ATAACATTTT GTGTGGTTTT AATTGTAAAA GCAAGATTTT CACTTTTTTT
  TGTTCCAAAT TGTGTCTCTA TCCACATAAA ACTCATTAAG ATGTACTTTC CACTTTTAGA
  TGTATATTGA AAATTTTTTC CCATTTGAAA ATTTTAGGTT AATAAAACTC TTATTTTTCC
  TGTATAATAT GTTTTAACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61086179	NES16599411	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51517660					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61086179	NES16599411	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138949517 () rs orientation: forward

Symbol	Name	Function Class
Rr398077	regulatory region 398077	1495 bp upstream
Rr586253	regulatory region 586253	1536 bp proximal
Stpg2	sperm tail PG rich repeat containing 2	Intron