rs51519258 SNP Detail

Summary

• ID
  rs51519258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12327107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTGTAG CCATGTGAAT
  GTGTGTGTGT GTATATATAT ATATATTTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTATCTATGT GCACTCCAGT CTAGTCCCAA CACATGACCT AGGAGGCTAC TGACCATCAA
  CAGGAATTAC ACCACTTAAT CCACTAGAAG TTCCTCTTCT AAATACATCA GTCCTTACTT
  Y
  TGGCATCAGG AGTTATCAAT CACCCAAGCT CATCACAGCC TAATAGAAGG AAAATGAAAC
  CACAAACGAA GCCCTATTCA ATACAATTGT TCTGTGTATC TGTGTGTGAG TGTGCTTGCA
  TGTCTGTGTG TTTGTGTGTA TATGTATCTG TGTGTCCGTG TATACATGTG TATATGTTGG
  TATGTTTGTG TATATGTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60572197	NES16031505	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		T
ss322497642	CHEV_8_12277107	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51519258					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60572197	NES16031505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12327107 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	1718 bp upstream
Rr659697	regulatory region 659697	1452 bp proximal