rs51519991 SNP Detail

Summary

• ID
  rs51519991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:140426614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCCTCCA CTGGTGTGCA
  CAGCACTGTC TGCCGCTGGG ACTGGGGGAT CCGGTTGTTG GTTACCAGGT CTCCTGGTCC
  CCACACATCT CTCTTTCAGG TGCAAGTGCT AGATGCTCAA GAGGACACAT AAGCAGACCC
  GAAACACGGC TTGACTTCCA TGAGCGACAG GACCAGCCCT ACAGCGACCA TGGATGTGCC
  R
  CGATCACTGC TTCTTCACGA ATAAATTCAC CCTCGAACTG TTAAATCAAT AAAGCCTACT
  GCAGCCCATG TGCTGGCTTC TCTCTCTCCC TGCAACACAG GGACACACAA AAAGTCCTAT
  CAGAGGCACC CTGAGAGATA AACCAAAAGA TGCAAACTCA TAATGCAAGG TCACTTTCCG
  GAAGCAATGT GTGAGGTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61072233	NES16047745	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51519991					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61072233	NES16047745	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:140426614 () rs orientation: forward

Symbol	Name	Function Class
C330022C24Rik	RIKEN cDNA C330022C24 gene	1012 bp upstream
Cimap1a	ciliary microtubule associated protein 1A	1215 bp upstream
Gm45785	predicted gene 45785	within coordinates
Rr400701	regulatory region 400701	1562 bp downstream
Rr657754	regulatory region 657754	1685 bp distal
Rr657755	regulatory region 657755	1144 bp distal
Rr657756	regulatory region 657756	1283 bp distal
Rr657757	regulatory region 657757	922 bp distal
Rr657758	regulatory region 657758	748 bp distal
Rr657759	regulatory region 657759	1214 bp proximal
Scgb1c1	secretoglobin, family 1C, member 1	within coordinates
Tssr69847	transcription start site region 69847	1134 bp downstream
Tssr69848	transcription start site region 69848	1053 bp upstream
Tssr69849	transcription start site region 69849	1069 bp upstream
Tssr69850	transcription start site region 69850	1083 bp upstream
Tssr69851	transcription start site region 69851	1100 bp upstream
Tssr69852	transcription start site region 69852	1115 bp upstream
Tssr69853	transcription start site region 69853	1142 bp upstream