rs51521042 SNP Detail

Summary

• ID
  rs51521042
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151350980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTAACAC AGTCAGCTTA
  ATAGAGTCTG CCTTTTACAA CATCTGGAGA AGAGAAAGAG GATTCAACAT CTAACATACA
  GAAAAAATAC TTCACAGAGA TACACCCTTG TAGATGACCT AGTGACAAGA GTTAAATCAG
  ATTAAACATG AACAAAACCA TTAAGCATTC CTGAGGCTTC CACCCAAAAG ATTGGGTTTT
  K
  TTAACCTTAT ATACATTTGA GCTTACTCTA TGACATTCCA TGTTAGACAA ACCTCTGGCC
  ATTAATCTGC ACTCTGACAA CTTCCAACTT CCTGATTTAA TTTGACCCAA TCCCAAGGAA
  CTGGCCTGCA GGAGCCAGCA CTCACCCCAG CAGATGTCCC ACACTGTGCA AAGCAGAGCA
  GTGCCCATCG AGGCAGCAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60861250	NES15995694	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51521042					SNP	G	G	G	T	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861250	NES15995694	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151350980 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	within coordinates
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	within coordinates
Tssr54686	transcription start site region 54686	635 bp downstream
Tssr54687	transcription start site region 54687	657 bp downstream