rs51523836 SNP Detail

Summary

• ID
  rs51523836
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30304918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACAGCTGGAT AGACAGCCTG AATCAGAGAG GACAGGAGCT
  CACCATTAGG ATAGCTGCTT TAGATAAGGA TGGTGAGGGG CAGCCTGCCA CCTCCTGCCT
  C
  CTCCTGCCTG TTTGGGGGAT TTTCAGTACT AGTCTCCACC TGAGGTTCTC TTAGCAATAT
  GCAATGGGGA GGGTGGGCAT CTGATGAACT CAAGGAGACT G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146398626	ENSMUSSNP2515156	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51523836					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30304918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	185 bp proximal
Crat	carnitine acetyltransferase	within coordinates
Gm16323	predicted gene 16323	within coordinates
Ptpa	protein phosphatase 2 protein activator	1144 bp upstream
Rr554310	regulatory region 554310	1180 bp distal
Rr554311	regulatory region 554311	518 bp distal
Rr554312	regulatory region 554312	within coordinates
Rr554313	regulatory region 554313	608 bp proximal
Rr554314	regulatory region 554314	1247 bp proximal
Tssr17115	transcription start site region 17115	712 bp upstream
Tssr17116	transcription start site region 17116	1125 bp upstream
Tssr17117	transcription start site region 17117	1174 bp upstream
Tssr17118	transcription start site region 17118	1190 bp upstream
Tssr17119	transcription start site region 17119	1281 bp upstream
Tssr23368	transcription start site region 23368	1607 bp upstream
Tssr23369	transcription start site region 23369	788 bp upstream
Tssr23370	transcription start site region 23370	726 bp upstream
Tssr23371	transcription start site region 23371	396 bp downstream
Tssr23372	transcription start site region 23372	483 bp downstream
Tssr23373	transcription start site region 23373	512 bp downstream
Tssr23374	transcription start site region 23374	532 bp downstream
Tssr23375	transcription start site region 23375	554 bp downstream
Tssr23376	transcription start site region 23376	603 bp downstream
Tssr23377	transcription start site region 23377	666 bp downstream
Tssr23378	transcription start site region 23378	708 bp downstream
Tssr23379	transcription start site region 23379	728 bp downstream
Tssr23380	transcription start site region 23380	861 bp downstream
Tssr23381	transcription start site region 23381	1097 bp downstream