rs51523999 SNP Detail

Summary

• ID
  rs51523999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108885669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TGGCTTGCCT GCCCACTTGC
  R
  TTGCAGCCCA GTGTCCCCAC AGCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61451644	NES16833308	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51523999					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61451644	NES16833308	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108885669 () rs orientation: forward

Symbol	Name	Function Class
Gm53191	predicted gene, 53191	1332 bp downstream
Rr368866	regulatory region 368866	1522 bp downstream
Rr686954	regulatory region 686954	1728 bp distal
Rr686955	regulatory region 686955	979 bp distal
Rr686956	regulatory region 686956	985 bp proximal
Shisa5	shisa family member 5	within coordinates
Trex1	three prime repair exonuclease 1	1331 bp downstream
Tssr87207	transcription start site region 87207	1730 bp downstream
Tssr87208	transcription start site region 87208	1700 bp downstream
Tssr87209	transcription start site region 87209	1611 bp downstream
Tssr87210	transcription start site region 87210	1561 bp downstream
Tssr87211	transcription start site region 87211	1487 bp downstream
Tssr87212	transcription start site region 87212	968 bp downstream
Tssr87213	transcription start site region 87213	610 bp downstream
Tssr87214	transcription start site region 87214	538 bp downstream
Tssr87215	transcription start site region 87215	307 bp downstream
Tssr87216	transcription start site region 87216	254 bp downstream
Tssr87217	transcription start site region 87217	181 bp downstream
Tssr87218	transcription start site region 87218	36 bp upstream
Tssr87219	transcription start site region 87219	337 bp upstream
Tssr87220	transcription start site region 87220	423 bp upstream
Tssr87221	transcription start site region 87221	647 bp upstream
Tssr87222	transcription start site region 87222	694 bp upstream
Tssr91570	transcription start site region 91570	1805 bp upstream
Tssr91571	transcription start site region 91571	1114 bp downstream
Tssr91572	transcription start site region 91572	1635 bp downstream
Tssr91573	transcription start site region 91573	1792 bp downstream