rs51524395 SNP Detail

Summary

• ID
  rs51524395
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32877959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAATAAA GGTGGGGTTC
  AATGTCGCCT TTGGCCATAC CAGTCTTATC TCCTCCCTCA TGTGGGAGGA GTTAAGTCCT
  GAGGATCTCT TTTCCATGCT CAGTGTGACC CTGACTTGGT TTCACTGTGC AGCTGGCTTA
  CTAAACCTCC TTTCTTGGCC TCATGCCCAG GCCAGGAGGA AACTGTCAGA TCTGGGAAGG
  W
  TTGGCTGGCA CACATGAGCC CAGCCTTCCA TTGCTTCCTT TAGGCACTTA TCCAAAGAGG
  CCCCAGAAGA AAGAGATTGA GGTGCTGCAG AAGAATCGCC ACTCCTGAGA GAAGGTGCCA
  AGCTAGGGAA AGTGGAGCTC CAGGGTACTA TCCTGGTTTG AGAGAGCCCT GATCATGTCT
  GGTGTGGTGT TGGGGAGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62679596	NES17313154	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		A	A	T	A		T
ss325362713	CHEV_17_32795930	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51524395					SNP	T	T	T	T	T	T	T	T	T	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679596	NES17313154	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32877959 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	within coordinates
Gm65897	predicted gene, 65897	304 bp upstream
Tssr143725	transcription start site region 143725	72 bp downstream
Tssr143726	transcription start site region 143726	8 bp downstream
Tssr143727	transcription start site region 143727	4 bp upstream
Tssr143728	transcription start site region 143728	24 bp upstream
Tssr143729	transcription start site region 143729	36 bp upstream
Tssr143730	transcription start site region 143730	59 bp upstream
Tssr143731	transcription start site region 143731	81 bp upstream
Tssr143732	transcription start site region 143732	95 bp upstream