rs51528097 SNP Detail

Summary

• ID
  rs51528097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185415182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACTCCC AGGCTGGGGA
  GATGATGTAG TTCAAACTTG TGCAGTCCCA GCGTTGTTCC TTCCTGGGAA GTACAGACAG
  GAGGATCGCT GATGCTCAAA GGCCAGCTTG CCTGGGGAGG CTCTGTCCCA GATGCTTAGA
  ACATAAGAAT CAACACCAGC TTGGTTGTCC TCTGACCTTC CCTTTTGTGA TGGGCACACA
  Y
  GTGCTCACAT TCACACGGGT GAATGAACAT GCATAGTCGT GCATACACAC ACACACACAC
  ACACACACAC ACACGCACAC GCACACGCAC ATGCACACTC GCGCACACAC ACACACACAC
  ACACACACAC GCACGCACGC ACACACGCTC TCACACACAC AGAGCACACA CAGAAAGGAT
  GCTCTCTTGT AGAGTAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146440001	ENSMUSSNP352515	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320178604	CHEV_1_187506864	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51528097					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185415182 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	425 bp distal
Rr425421	regulatory region 425421	877 bp distal
Rr425422	regulatory region 425422	1813 bp proximal