rs51528236 SNP Detail

Summary

• ID
  rs51528236
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76168774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCAGCCTG GTGCCACAAA AAAATGAGTT AAAAGTTCTT
  GCACCTAATC ATGTCCGGAC TTTCCCCCAA CTAAAATGAC CCATTAATTA AAACAACAAC
  A
  ACGACGACAA AGTATTTTAA CGTGAAATTA CCTAACGTTC CGTTTTTCGT TTACGACCTC
  CAGAATCCAG TTAAATTACT GACATGATGG AAGGTAGAA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148378995	ENSMUSSNP1216289	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51528236					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76168774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8372	CpG island 8372	119 bp proximal
Nrip1	nuclear receptor interacting protein 1	within coordinates
Rr325475	regulatory region 325475	within coordinates
Tssr139017	transcription start site region 139017	1211 bp upstream
Tssr139018	transcription start site region 139018	1307 bp upstream
Tssr141820	transcription start site region 141820	1128 bp downstream
Tssr141821	transcription start site region 141821	1953 bp downstream
Tssr141822	transcription start site region 141822	1968 bp downstream
Tssr141823	transcription start site region 141823	1986 bp downstream