rs51529560 SNP Detail

Summary

• ID
  rs51529560
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116508331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAGGCAG AGGCTTGAGC
  AAGCTAATCT CTCCCCACTT CCGCCACTTC CTAGGAATAT CCCTGTACCG CCATTAGGAA
  AGGCAGAGCG CCTAGAAATT TCGAGCAGAT GACCAAACAA AGAGATGGCA AAAGCACGAG
  ATATGCACCA GACACATTCA AAGGTTTATC CCAGTCCTCC CTACAGCACT AATGATTTCC
  Y
  TGCTCATTCC AACTCTGAGG AAACCGAGGT CCAGAAACAC GTTATCTGAG AACAGAATAG
  GAGGAAGTGC TCAAACGCGA AACTAAATCG CATCCCTCGA CGTGCTGGCG CCATTCGCTC
  AATCCTGGCC CTGACCTGTG GTACTGAAGG ACCCTCGCCT TTAACTCAGG AGAAAAAGAC
  GAGTCAGCAG CAGGAAGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362953538	MGP_WTSI_4_116323739	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs51529560					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362953538	MGP_WTSI_4_116323739	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116508331 () rs orientation: forward

Symbol	Name	Function Class
Akr1a1	aldo-keto reductase family 1, member A1	within coordinates
Cpgi14637	CpG island 14637	within coordinates
Rr597944	regulatory region 597944	within coordinates
Rr597945	regulatory region 597945	532 bp proximal
Rr597946	regulatory region 597946	536 bp proximal
Tssr38538	transcription start site region 38538	1285 bp downstream
Tssr38539	transcription start site region 38539	374 bp upstream
Tssr42908	transcription start site region 42908	647 bp upstream
Tssr42909	transcription start site region 42909	255 bp downstream
Tssr42910	transcription start site region 42910	285 bp downstream
Tssr42911	transcription start site region 42911	301 bp downstream
Tssr42912	transcription start site region 42912	407 bp downstream
Tssr42913	transcription start site region 42913	432 bp downstream
Tssr42914	transcription start site region 42914	462 bp downstream
Tssr42915	transcription start site region 42915	510 bp downstream
Tssr42916	transcription start site region 42916	543 bp downstream