rs51530854 SNP Detail

Summary

• ID
  rs51530854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88198039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGC CTTAGCTGTC TGTGAAGCTA
  R
  CAGTCCTTAT GAGAAGTCCC TAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145439813	ENSMUSSNP5055371	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51530854					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88198039 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	within coordinates
Cbln1os	cerebellin 1 precursor protein opposite strand	1401 bp upstream
Cpgi20770	CpG island 20770	1720 bp distal
Cpgi20771	CpG island 20771	143 bp distal
Cpgi20772	CpG island 20772	184 bp proximal
Rr666962	regulatory region 666962	965 bp proximal
Rr666963	regulatory region 666963	1090 bp proximal
Rr666964	regulatory region 666964	1543 bp proximal
Rr666965	regulatory region 666965	1629 bp proximal
Rr666966	regulatory region 666966	1917 bp proximal
Tssr2634	transcription start site region 2634	1115 bp downstream
Tssr78595	transcription start site region 78595	1360 bp upstream
Tssr78596	transcription start site region 78596	1372 bp upstream
Tssr78597	transcription start site region 78597	1394 bp upstream
Tssr78598	transcription start site region 78598	1427 bp upstream
Tssr78599	transcription start site region 78599	1455 bp upstream
Tssr78600	transcription start site region 78600	1478 bp upstream
Tssr78601	transcription start site region 78601	1485 bp upstream
Tssr78602	transcription start site region 78602	1742 bp upstream
Tssr78603	transcription start site region 78603	1839 bp upstream
Tssr78604	transcription start site region 78604	1968 bp upstream
Tssr78605	transcription start site region 78605	1996 bp upstream
Tssr82308	transcription start site region 82308	1489 bp upstream
Tssr82309	transcription start site region 82309	1302 bp upstream
Tssr82310	transcription start site region 82310	1109 bp upstream
Tssr82311	transcription start site region 82311	950 bp upstream
Tssr82312	transcription start site region 82312	760 bp upstream
Tssr82313	transcription start site region 82313	734 bp upstream
Tssr82314	transcription start site region 82314	710 bp downstream
Tssr82315	transcription start site region 82315	750 bp downstream
Tssr82316	transcription start site region 82316	789 bp downstream
Tssr82317	transcription start site region 82317	954 bp downstream
Tssr82318	transcription start site region 82318	1132 bp downstream
Tssr82319	transcription start site region 82319	1165 bp downstream
Tssr82320	transcription start site region 82320	1192 bp downstream
Tssr82321	transcription start site region 82321	1204 bp downstream