rs51531422 SNP Detail

Summary

• ID
  rs51531422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25759240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCGGACT TACAGAGGTT
  GAGACACAGC AGTCGGAGTT AGAGCCTCAG AGGTCAGCTG TGGTAAGGCA CTAGCTACAA
  CCACCATCAC TACTGTGATG AGAGGTTTTT ACCAGGCTGG AGGCCACTCA TCCAGGAGTT
  TTCCTATTCT AGCCCAGGAA CTGTTGCATT CCAGGAAAGC CTTTGTTTTC CTGGTAAACA
  Y
  TGGTAGTTGA TCATCATCAC GCTCCACTAG CACAGAGGTA CTTGGAACCA GGATCATACA
  TAGGGCCTGG AACTTATGGT AGCTTCTAGC GGGGACTGCA GCTCCGGATT GGAACCAGCT
  GCTGTCACGG GATCTGTGCG CAGTGAAGAA GTCGGTGGGG AAGAGAGACG TGTGGCTATC
  ATCCGTTCGA TAGTCTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss52193810	NES15225018	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs51531422					SNP	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52193810	NES15225018	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25759240 () rs orientation: forward

Symbol	Name	Function Class
Gm47930	predicted gene, 47930	331 bp upstream
Gm66740	predicted gene, 66740	366 bp upstream
Rr218979	regulatory region 218979	240 bp distal
Rr218980	regulatory region 218980	within coordinates