rs51531535 SNP Detail

Summary

• ID
  rs51531535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56299458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGTGCAT CACTCAGATA
  GACAGACCGG CTGATTGCCA CATTTTAAAA AAAAAAAAAA AAACCTCAAA CGATAATATA
  TTTTAATTAT GTTTGGTAGA TAACTATGGC AATTGACCTA AATCAATTAA ATACAGGGAT
  AGGGCCAGTG TTTAAAACAT GGCCACTACG GTGCTTTCTT GTAGATTGTT TTCGTTAGCC
  Y
  GGATGGATGC TGAGGATGTG ATTCTGGCTC TATCCAGCAG GTTCTACAGT TCTGCTCTCT
  TCAATACCCC TGGCAGCTTT GGGGTCTGAG CATGCACACC CCTTCTGGGG GGGGAGGGGG
  AAAAGCTCCC TGAAGCAGGG TAGACTGTGG GTCAGGGAAT TGTCTAGGCT TTCTACTAAT
  CTCTGAAGAC GAGAAGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52437179	NES15406597	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	C		C
ss324047699	CHEV_12_57353660	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51531535					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52437179	NES15406597	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56299458 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	570 bp upstream
Gm25917	predicted gene, 25917	229 bp upstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	58 bp distal
Rr260934	regulatory region 260934	1858 bp distal
Rr267727	regulatory region 267727	within coordinates
Rr267728	regulatory region 267728	1543 bp proximal
Tssr113509	transcription start site region 113509	474 bp upstream
Tssr113510	transcription start site region 113510	515 bp upstream
Tssr113511	transcription start site region 113511	555 bp upstream
Tssr113512	transcription start site region 113512	577 bp upstream