rs51533449 SNP Detail

Summary

• ID
  rs51533449
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152584628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACACTGT TGTAGTTTTG
  TGGTTTCTCA AAGATTTGAC TATCAGCTGA CAATACTATC TGGGAATCCC ACTTGAAGAT
  GTAAGGCCCA AAGATGGCAC GGGCTTACAG AGACACTTGC AGATCAGTAG CAGTGGCAAT
  GTTTTCTTCA ACAGCCAAAC GGAGAGAATA AGTGCAGTGT CCATGGTGGA TAAGGAACAT
  A
  ATGTGCGTGC CCCAACAGTG GTGCACATCT GGGCTTAGAC AGAAAGGACA CTCAGATATC
  ACCCTGCCAC ATGTATGAAC TCTGGAACCA TGTTAAATAA AGCAATCCTG AAGCAGAAAG
  ACAAATACTG TATCAGCTTC CTCCTCTTCC TCCTCCTTCT CCACTGAGGG ACCCAGAACA
  GTCAAAGTCA CAGAGATTCA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136104264	ENSMUSSNP413250	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321029021	CHEV_3_152541955	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51533449					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152584628 () rs orientation: forward

Symbol	Name	Function Class
Rr66444	regulatory region 66444	573 bp proximal
Rr79922	regulatory region 79922	973 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates