rs51533558 SNP Detail

Summary

• ID
  rs51533558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95861136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAA GAGCACTCTG ACTGCTCTTC
  Y
  GGAGGTCCTG AGTTCAAATC CCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135513209	ENSMUSSNP4499617	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320841260	CHEV_3_95757747	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51533558					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95861136 () rs orientation: forward

Symbol	Name	Function Class
Rr375411	regulatory region 375411	1936 bp downstream
Rr581097	regulatory region 581097	1840 bp distal
Rr581098	regulatory region 581098	280 bp distal
Rr581099	regulatory region 581099	305 bp proximal