rs51533987 SNP Detail

Summary

• ID
  rs51533987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86762113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC CTCGCCCTCC ATCCCTATAG
  Y
  CGGGCCGCCC TGAGCCGCGA TGCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323058452	CHEV_9_86774895	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51533987					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86762113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22106	CpG island 22106	within coordinates
Rr684153	regulatory region 684153	within coordinates
Rr684154	regulatory region 684154	344 bp proximal
Snap91	synaptosomal-associated protein 91	within coordinates
Tssr90794	transcription start site region 90794	305 bp downstream
Tssr90795	transcription start site region 90795	343 bp downstream
Tssr90796	transcription start site region 90796	354 bp downstream
Tssr90797	transcription start site region 90797	421 bp downstream
Tssr90798	transcription start site region 90798	431 bp downstream
Tssr90799	transcription start site region 90799	587 bp downstream
Tssr90800	transcription start site region 90800	638 bp downstream