rs51534027 SNP Detail

Summary

• ID
  rs51534027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16189766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGGTGA CGTTATTATA
  ACACAGAGAT GTTCTCCTGA ACCATTGTGA TGCAAGTGCC CCTACTTCTC TCCATTTTTT
  TTAAATGAAA GTTTTAGGTA ATATGGACAG TCTTATCAAC AACAGCAGAG TCCTTGGTGT
  TTCTGGAGCT GGGAGTCCTC CTAACCCTAC AAAGGTGTCA GAGGGCTTAT AACTGAGAAA
  R
  TCTTGTGCAT TGTTGCTTTG GGAAAAGATA GCATTTGTGT GGTTCAGAAA AGCATTGATA
  CCTGTCAAAA CTGAAGTTTA ACCTAGTGTC ATGATTTTAT CAACTTCTTG TATGTAGATC
  TTATGCTTGT AGTTCTGACA CCTATTAAAT CTGTCCTCCT GACCTGCTTT ACTTCACTAG
  AATGCTCTGA ACATAGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52620151	NES15517503	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51534027					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620151	NES15517503	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16189766 () rs orientation: forward

Symbol	Name	Function Class
Inhba	inhibin beta-A	within coordinates
Tssr118431	transcription start site region 118431	773 bp downstream
Tssr118432	transcription start site region 118432	742 bp downstream
Tssr118433	transcription start site region 118433	729 bp downstream
Tssr118434	transcription start site region 118434	708 bp downstream
Tssr118435	transcription start site region 118435	1147 bp upstream
Tssr118436	transcription start site region 118436	1503 bp upstream
Tssr118437	transcription start site region 118437	1743 bp upstream
Tssr118438	transcription start site region 118438	1866 bp upstream
Tssr118439	transcription start site region 118439	1883 bp upstream