rs51534873 SNP Detail

Summary

• ID
  rs51534873
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52177602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCAGAG CTCCACGACC
  CCCAAAGAGC CTGGGCCTGA CCAACCTTAG AAAGAAGGCC CGGGGCTGCC AAGTTTTCAC
  AGACAGACCC ATTTTCACAC ACGCGCGCGC GCGCGCACAC ACACACACAC ACACACACAC
  ACACACACAC ACAATCATCT TTTTGCACGC CGGCGGGAGC AGCGGAAGTC ATTAACATCA
  M
  GATTGTGCAG CAATTAAAGT TAGGCCTGGG GAAGCCGTTC TCGGCCGGCC ACAGGCATTC
  TTCACCGCGC AGCCTCCACA AGGCTGGCTC TGGCTTTGCT AATTTAGGCA GGCAGAGGGA
  AAAGTTTGTT CTCCCATTTT GAATACTGAG CCAGACAGAA AGAGAGGACA AGAAACTTTT
  TAAGAGTGAA AATAAACTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60886897	NES15971104	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51534873					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886897	NES15971104	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52177602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17422	CpG island 17422	within coordinates
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	Intron
Hoxa5	homeobox A5	1166 bp downstream
Hoxaas3	Hoxa cluster antisense RNA 3	502 bp upstream
Tssr56510	transcription start site region 56510	576 bp upstream
Tssr60990	transcription start site region 60990	324 bp downstream