rs51536939 SNP Detail

Summary

• ID
  rs51536939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41492653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC TCACATTCTC CCCCTGCTCC
  S
  GATGGCGCTC CTGGAAGCTC TGCAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss61386155	NES16764721	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G		C	C		G
ss322927322	CHEV_9_41389440	CHEVERUD	SCREENING_POP	f	SNP								G			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs51536939					SNP	G	G	G	G	G	G	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386155	NES16764721	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41492653 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	551 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	569 bp upstream
Tssr84512	transcription start site region 84512	1688 bp downstream
Tssr84513	transcription start site region 84513	1640 bp downstream
Tssr84514	transcription start site region 84514	1465 bp downstream
Tssr84515	transcription start site region 84515	1390 bp downstream
Tssr84516	transcription start site region 84516	1366 bp downstream
Tssr84517	transcription start site region 84517	1340 bp downstream
Tssr84518	transcription start site region 84518	640 bp downstream
Tssr84519	transcription start site region 84519	605 bp downstream
Tssr84520	transcription start site region 84520	435 bp downstream
Tssr84521	transcription start site region 84521	390 bp downstream
Tssr84522	transcription start site region 84522	353 bp downstream
Tssr84523	transcription start site region 84523	257 bp downstream
Tssr84524	transcription start site region 84524	97 bp downstream
Tssr84525	transcription start site region 84525	41 bp downstream
Tssr84526	transcription start site region 84526	6 bp downstream
Tssr84527	transcription start site region 84527	643 bp upstream
Tssr84528	transcription start site region 84528	1667 bp upstream
Tssr88995	transcription start site region 88995	1834 bp upstream
Tssr88996	transcription start site region 88996	1794 bp upstream
Tssr88997	transcription start site region 88997	549 bp upstream