rs51537229 SNP Detail

Summary

• ID
  rs51537229
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14011141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCCAACC ACTCAGCTCC
  ATGTATAGCC CTAGGCTCTT TCTATCTTAA CATTAGCATC TCTCTCTCTA GGATCCTTCA
  CCATGATGAG ATCTGCAAGT CTTCTGACGT ATCTAACAAC ATCCAGTGGC CGAGATTAAG
  GTGAGCAAGT GCTTGCTTGC TGGCACCAGG CTTTATAGAC CCATCTACTG ATGGGAAGGG
  A
  CAGGAAATCA GGTTGCCTTT CTCACTGTCA CCTCCTGCCA CATAAGCCAA GGTTCTAGTG
  GCCTGCCTCA CTTGATGGAT GGACTCCAGA GATGATCACA GAGCATCTCA GGTCTTCTTC
  AATGCTGGCA ATGTTCCAGG AAGTGGTCAG GGTTGTATCT GCATGAATGA CAGGTGCTTC
  AACTGGAGAT ATGACTAAAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138989849	ENSMUSSNP1125096	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51537229					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14011141 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	within coordinates
Rr287211	regulatory region 287211	1741 bp distal
Rr298208	regulatory region 298208	971 bp distal
Rr300930	regulatory region 300930	265 bp distal
Rr389289	regulatory region 389289	556 bp downstream