rs51538376 SNP Detail

Summary

• ID
  rs51538376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16236015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCGGAAA AACATTTTCA
  GGAGTGGTTC TCTCCTATCA CGTGGGTTCC AGGTATAGAA CTCATGTTGT CAGTTTTTGG
  TGTAAGTGCC CTTATCTGCC CAGCCATTTT GCTGGCCTTG GACTATTTCT TAAACTTACT
  TTGGAGCCAG GCAGTGGTGG CGCATACCTT TAATCCCAGC ACTCGGAGGC TGAGGCAGGC
  Y
  GATTTCTGAG TTCGAGGACA GCCTCGGCTA CAGAATGAGG TTTTAAAAAA TTTTTAATTT
  TTGAAACGTA GCCTTGGCTG TCCTGGAACT CATATAGATC AGGCTAGCCT CAAACTCACA
  GAGATCCACC CTCAAGTGCT GAGTTTAAAG GTATGTGCTC CCTCACCCAG CCTTCAATTT
  TTGTAGCAGC AGTTATCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134642355	ENSMUSSNP4591716	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51538376					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16236015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12993	CpG island 12993	1030 bp proximal
Gm64384	predicted gene, 64384	671 bp downstream
Rr397612	regulatory region 397612	1133 bp upstream
Rr573789	regulatory region 573789	1465 bp distal
Rr573790	regulatory region 573790	871 bp proximal
Rr573791	regulatory region 573791	1396 bp proximal
Rr573792	regulatory region 573792	1857 bp proximal
Tssr833	transcription start site region 833	1762 bp downstream
Tssr28473	transcription start site region 28473	1326 bp upstream
Tssr28474	transcription start site region 28474	1357 bp upstream
Tssr28475	transcription start site region 28475	1446 bp upstream
Tssr32661	transcription start site region 32661	1791 bp downstream
Tssr32662	transcription start site region 32662	1982 bp downstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3	1361 bp upstream