rs51538713 SNP Detail

Summary

• ID
  rs51538713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:84615295 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      A TAGTAATATT GGAGGACCCA GCTATACCAC TCCTAGGCAT
  ATTCCCAAAA GATGCTCCAA CATATAACAA GGACACATGC TCCACTATGT TCATAGCAGC
  Y
  TTATTTATAG TAGCCAGAAG CTGAAAAGGA ACCAAGTGTC CTTCAATAGA GGAATGGATA
  TAGAAGATGT GGTACATTTA CACAATGGGG TGCTACTCAG C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133456968	ENSMUSSNP4455514	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51538713					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:84615295 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22816	CpG island 22816	1970 bp proximal
Rr395312	regulatory region 395312	1549 bp upstream