rs51538736 SNP Detail

Summary

• ID
  rs51538736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:39907667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCC TTTCCCAATC TGTTGGTGGC
  Y
  TGAGACTACC CCATCTGGGT GTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss144611495	ENSMUSSNP5157702	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss322623096	CHEV_8_40539980	CHEVERUD	SCREENING_POP	f	SNP			C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs51538736					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:39907667 () rs orientation: forward

Symbol	Name	Function Class
Gm5609	predicted gene 5609	1284 bp upstream
Rr1558	regulatory region 1558	605 bp proximal