rs51539273 SNP Detail

Summary

• ID
  rs51539273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40506547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATTACC TCCTCTGGAA
  ACAAGTCCAG GACCTCCCTC TCCCAGCCTT CCCCACTGGA CTGTGTCCTG CTGGGAATCT
  TCTCTTGTCT TTCTTCAACC CTGGCAGTCT GACATCTCAG CTCACCTGCT CAGAAACGCA
  CACGGCTCAG TTGGAGGAGA AGCGCACATT AAACCTCCCT GAAAAGGCTT CAAGGCTCAC
  R
  GAGTGGGAGT CAAGTGGAGC TAGGGAGGAG GCAGAGAACC ACTCATAGCC AGACCTCATG
  ATGTCTGCCA TGGCTAACCT CACCTGGCCT GATGCCCTGT TCACTGCCTG TTGCAAGAAG
  GGATTGTACC AGGGGTGGGT GGGATTTAGG CTAACAACAC AAGCAGCTGG CTGAGAGAAC
  TTTACCCCTA AGGAATGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61273387	NES16894431	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	G	G	G	G	A
ss147067405	ENSMUSSNP6861122	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51539273					SNP	A	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273387	NES16894431	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40506547 () rs orientation: forward

Symbol	Name	Function Class
Ddo	D-aspartate oxidase	within coordinates
Rr214674	regulatory region 214674	947 bp distal
Rr224698	regulatory region 224698	within coordinates
Tssr93026	transcription start site region 93026	498 bp downstream
Tssr93027	transcription start site region 93027	488 bp downstream