rs51539544 SNP Detail

Summary

• ID
  rs51539544
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60056896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGAGC AAAGTCTATA
  GAAATATACT GAGTGACAAA TAACTAGAGC CAAAGATATT CCTTTCACTG AAAAAAATAG
  AGGATCAAAG CACTACTGCC ATTGGAGAGA AATTCTTTAG CCACTCATCA GTCAACCTGT
  CCTCCATGAT TAATTCTTAT TCTCCTTAAT CTTTGATGAG CAGTCATGTA CCTACAGTAT
  M
  TTTTCAACTA CAGAGGTGTG GGAATCTCAA CTCTTACATT GCTATGGCCC ATGATAATTT
  ATGAAGCACC ATCAGAGGCT TCTGGCATGA TCTTTTTCTG TGGGTATCTG GGATAGTTCT
  ATTTTGTTGC TGATAAAGCC CCCTGCCCTA ATTTGCTGGT GATAGTTAGG AGGTGTCAGA
  GTATAAACAC AATCAACTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147991186	ENSMUSSNP2012616	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51539544					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60056896 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	1770 bp upstream
Tssr134460	transcription start site region 134460	1839 bp downstream
Tssr134461	transcription start site region 134461	1980 bp downstream