rs51539829 SNP Detail

Summary

• ID
  rs51539829
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTGGAG ACAATACTCG
  CATTTGAAGG ACCTAGAGGG GTTCGTGAAC CTCAGCTCGC TCACCCACTA TCTCATTTTA
  CTTAAAATAA TCACTACTGA ATTGAAAGAA CTAGTTCATC ATAAGGCTCA AGTAACCGCG
  GCGCGTTGCC CAAACATTTC ATTTACATTC TGGATGGTCT TCTGAGGGTG TCCTTAAGAA
  Y
  GGTCTGTATT AGTCCTGAGC TGAGAAGTCC GAGATTAAGG GCCTTCCTTC TCTGGCCAGT
  AGATGGTAGC CTGCATCTTT CCGTGGGTTT TTCTTTTGTG CCTGTCTGCA CCTGTCAGGT
  TTTTTATTTT ACAAAATGTA GTTTTGTTTT TATGTTACTC TGCTGTTACA CAGGGCATAA
  CATTTTCATA AGGCTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60445517	NES15941792	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		T	T		C
ss320920411	CHEV_3_123212176	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51539829					SNP	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445517	NES15941792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	300 bp distal
Gm9369	predicted pseudogene 9369	684 bp downstream
Rr584525	regulatory region 584525	384 bp distal
Rr584526	regulatory region 584526	within coordinates
Rr584527	regulatory region 584527	52 bp proximal
Rr584528	regulatory region 584528	1638 bp proximal
Snhg8	small nucleolar RNA host gene 8	922 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	1192 bp upstream
Tssr31551	transcription start site region 31551	690 bp downstream
Tssr31552	transcription start site region 31552	643 bp downstream
Tssr35502	transcription start site region 35502	917 bp upstream
Tssr35503	transcription start site region 35503	329 bp upstream