rs51540042 SNP Detail

Summary

• ID
  rs51540042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101830200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAAAGCT CTCGTATAAA
  AAGCGCAAGG CCCTGCATCT CCAGCTGGCA ACGAGGTGAT AAAAGCCCAG GAAAGTTAAC
  AGGTCCTGAC CCAGAATACT GGCCTTCTCA GTGCCACACT CAAGATTTGA TTCTAAGTTG
  GCAACCACCT GGCTAGGCAA ATAAGATGCT AACACAAGAA GTGGAGCAGA GAAGTGGCCA
  R
  AAGGATTGCC AGGAGAGGGG ATATATACTT GGAACTCCTG GTTAGATGGA ATATTGTCAA
  AGAAACCATT ATACATGAAG ACCAGACATT GCAGTTGCAG TTCTATTTCT CTATACTAAT
  TCTTACTCTG CTAAGAGAAA GGCTTCCAAG TATCACCACT TGAACCGATG TTCTGCCTGG
  TGCTGAAGTC AACTGAAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60429037	NES15933211	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51540042					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60429037	NES15933211	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101830200 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13622	CpG island 13622	876 bp proximal
Rr76960	regulatory region 76960	200 bp proximal
Slc22a15	solute carrier family 22 (organic anion/cation transporter), member 15	within coordinates
Tssr34811	transcription start site region 34811	1312 bp downstream
Tssr34812	transcription start site region 34812	1396 bp downstream
Tssr34813	transcription start site region 34813	1494 bp downstream
Tssr34814	transcription start site region 34814	1536 bp downstream
Tssr34815	transcription start site region 34815	1584 bp downstream
Tssr34816	transcription start site region 34816	1624 bp downstream
Tssr34817	transcription start site region 34817	1640 bp downstream
Tssr34818	transcription start site region 34818	1745 bp downstream