rs51540119 SNP Detail

Summary

• ID
  rs51540119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:160904149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CATACAAAA TGACTGGTTT CCCTGTGGCA
  TGTTCACATG TGTATCATAC TTCCTTGTTT TCTCTGCGAC CTGATCCTGT CCCTCCTCCC
  AAATGGTTTT CCTTTCTGCT TTCACTTTAT TACCCTACTT TATGATCTCG TCCTTCTGCT
  Y
  ACGCTCCCTT TCTGTTTTCA TGACCACATG CACATATACA CACAtctaag ttctgaatat
  tagagaaaac ataggcactt atctggctta ctttacctaa catctaagag tatccatttt
  cttgaaaatg tcatggtttc attttttttt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145905535	ENSMUSSNP4511288	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320080236	CHEV_1_163006710	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51540119					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160904149 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cenpl	centromere protein L			Intron
				Noncoding-Transcript-Variant
Rr396459	regulatory region 396459			within coordinates
Rr421754	regulatory region 421754			within coordinates