rs51540696 SNP Detail

Summary

• ID
  rs51540696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141430788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCACATC TCGAAATCTC
  AGATATATAA TACATAAGGT CATTAGACTA GACTATGAGA GTTGAAAGGT TTTCCTCCTA
  AGAGAAATAG TCCCCCAGTC CTTCACCAAG GAATGCTGTG AGATTATGTT GGGGCATTTA
  ATTCAAATCC ATATTTTCTG AGGAGCTACT CTATAAAATA CACCATGCAT AAAAGTATAT
  Y
  CAACCTCAGA ACATTTTCAT ATTTTAAATA AGCATAGAGC TGGGTCTGAA GGTGCAAATC
  TATTATCCCA GCCATTTGGC AGGCTGAGGC AGAAGAACTG TCGAGTTGTA GGGTAGTTTG
  GGCTACAGAA GGCATTCAGA GACAGGTTGG ACATGTTCAT GAGACCCTTT CTCAAACTAT
  AAAGAAATTT AAAAGGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61091301	NES16613431	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C		C
ss320994759	CHEV_3_141387991	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51540696					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61091301	NES16613431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141430788 () rs orientation: forward

Symbol	Name	Function Class
Unc5c	unc-5 netrin receptor C	within coordinates