rs51540784 SNP Detail

Summary

• ID
  rs51540784
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76133208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACCTAAGA CAGGACGGTT GCCCCAGAGC CCTCAACACC
  CACAGTCTCA CCTCTCTCCT TCCCTCCCAG ACCCGCTATG ACTTCACCTC GTGCATGGGC
  S
  TGCTCCTGGT GAGTGTTGTG GTGCTCTTCA TCTTCGCCAT CCTCTGCATC TTCATCCGGA
  ACCGCATCCT GGAGATTGTA TACGCCTCGC TGGGCGCTCT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	PWD/PhJ	WSB/EiJ
ss63565973	NES16967308	PERLEGEN	MM_PANEL2	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	PWD/PhJ	WSB/EiJ
rs51540784					SNP	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63565973	NES16967308	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76133208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7222	CpG island 7222	1298 bp distal
Grina	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	within coordinates
Mir6953	microRNA 6953	750 bp downstream
Tssr131723	transcription start site region 131723	1985 bp downstream
Tssr131724	transcription start site region 131724	1600 bp downstream
Tssr131725	transcription start site region 131725	1467 bp downstream
Tssr131726	transcription start site region 131726	1399 bp downstream
Tssr131727	transcription start site region 131727	1332 bp downstream
Tssr131728	transcription start site region 131728	1313 bp downstream
Tssr131729	transcription start site region 131729	1172 bp downstream
Tssr131730	transcription start site region 131730	1152 bp downstream
Tssr131731	transcription start site region 131731	1085 bp downstream
Tssr131732	transcription start site region 131732	1055 bp downstream
Tssr131733	transcription start site region 131733	1019 bp downstream
Tssr131734	transcription start site region 131734	990 bp downstream
Tssr131735	transcription start site region 131735	936 bp downstream
Tssr131736	transcription start site region 131736	866 bp downstream
Tssr131737	transcription start site region 131737	710 bp downstream
Tssr131738	transcription start site region 131738	536 bp downstream
Tssr131739	transcription start site region 131739	510 bp downstream
Tssr131740	transcription start site region 131740	445 bp downstream
Tssr131741	transcription start site region 131741	384 bp downstream
Tssr131742	transcription start site region 131742	196 bp downstream
Tssr131743	transcription start site region 131743	166 bp downstream
Tssr131744	transcription start site region 131744	147 bp downstream
Tssr131745	transcription start site region 131745	20 bp downstream
Tssr131746	transcription start site region 131746	10 bp upstream
Tssr131747	transcription start site region 131747	68 bp upstream
Tssr131748	transcription start site region 131748	229 bp upstream
Tssr131749	transcription start site region 131749	259 bp upstream
Tssr131750	transcription start site region 131750	466 bp upstream
Tssr131751	transcription start site region 131751	538 bp upstream
Tssr134960	transcription start site region 134960	1347 bp upstream
Tssr134961	transcription start site region 134961	960 bp upstream
Tssr134962	transcription start site region 134962	835 bp upstream
Tssr134963	transcription start site region 134963	301 bp downstream
Tssr134964	transcription start site region 134964	351 bp downstream
Tssr134965	transcription start site region 134965	383 bp downstream
Tssr134966	transcription start site region 134966	497 bp downstream
Tssr134967	transcription start site region 134967	893 bp downstream