rs51541209 SNP Detail

Summary

• ID
  rs51541209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126775772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGACTAGT ACTGAACTCA
  CTTTGAAGAT GATGGCCTAG AACTCAGAGA TCTTCCTGTA TCATAGGCAT AAGTCACCAT
  GCCTGAGGTT TTGGGGGTCC CTCCCCCCAT TTTCTTATAC TCATCTATGT ATCTCCCATG
  CTGCTATCCA GTTAATGGAA GGATCCCTCT TTGCTCTGTT GACTGCTGTG TCCTTACACA
  Y
  AGAATATCCA GTGTATACTA GGTTGTCAAA TATTTGTTGG ATGACTATTT AATACCAAAC
  ACTGAATAGG ACAGTGTTCC TGTTATCCTA AAGGAGGGAC ACAGCAAGGA CTACAGATGT
  GTGAGCAAAC ACTGTTACAA AGCAACCTTT CACAAGGAAC TCCACAAGGA TCCAAGGGAG
  GTAAAAATAG GGCACCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320498579	CHEV_2_126759588	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51541209					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126775772 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	448 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	765 bp distal
Rr564423	regulatory region 564423	776 bp distal
Rr564424	regulatory region 564424	628 bp distal
Rr564425	regulatory region 564425	127 bp distal
Sppl2a	signal peptide peptidase like 2A	617 bp upstream
Tssr26084	transcription start site region 26084	1946 bp upstream
Tssr26085	transcription start site region 26085	762 bp upstream
Tssr26086	transcription start site region 26086	719 bp upstream
Tssr26087	transcription start site region 26087	688 bp upstream
Tssr26088	transcription start site region 26088	625 bp upstream
Tssr26089	transcription start site region 26089	611 bp upstream
Tssr26090	transcription start site region 26090	15 bp downstream