rs51542695 SNP Detail

Summary

• ID
  rs51542695
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127688235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATTTTC CAGAATTATT
  CAATTTATAA TTTGGAGTTC TGGTATCCTT AAAACCAATC CAAAAAGAAG AACAGGAGAA
  TATCTCCATG ATGAAAAATT AAAATGACTT TTTGGAATGT TTTATGTTGT TAACTCTAAT
  TCTCCTTCAG ATAGTATGTG TACAAAAACA GCTCTATCTA TGTGACATTG CATGGATTTT
  W
  AAATTTCATT TGCAGGTTGT AAAAAAAAAA AAAAAAAAAA AAACCAAAAC AAAACCCTAG
  ATGATAGGCT TTGTGATACT GTTGCCAAAC GATTGATCAC AAAAGTTTGC TTTCTGCATT
  ATCGAGTTGG GCTGTACCAG TTCTGAGCTC CTGATAAGAA GTTCCCAGGT GCTGATATAG
  TAGGATCTCA GGTGTGTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874454	ENSMUSSNP2307791	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320957984	CHEV_3_127597504	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51542695					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127688235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1128 bp proximal
Fam241a	family with sequence similarity 241, member A	Intron
Rr398009	regulatory region 398009	1687 bp upstream
Rr584895	regulatory region 584895	279 bp distal
Rr584896	regulatory region 584896	1412 bp proximal
Rr584897	regulatory region 584897	1692 bp proximal
Tssr35606	transcription start site region 35606	18 bp downstream
Tssr35607	transcription start site region 35607	922 bp downstream
Tssr35608	transcription start site region 35608	1634 bp downstream
Tssr35609	transcription start site region 35609	1661 bp downstream
Tssr35610	transcription start site region 35610	1685 bp downstream