rs51543077 SNP Detail

Summary

• ID
  rs51543077
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65140809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGGATGC TGATTATGGG
  GTGGATCCCT GGCTATGGCA GTCTCTACAT GGTCCATCCT TTCATCTCAG CTCCAAACTC
  CGTCTCTGTA ACTCCTTCCA TGGGTGTTTT GTTCCCAAAT CTAAGGAGGG CCTACCAAGC
  TTATTTTGAC GCTGTCTTTT GTATGCATGA CATGCAATGA TTCGGATTTA TTTTGAGTCC
  R
  CATACATTTC TTTTTCTTTT TCTTTTTTTT CGTTTTCTTT TTCTTACCCC CTGCCCTTCA
  GACTGGTGAT GTAGATCATA TCTCATGAAA CTCTAATCAC CTGTTTCATG AGAGACTAGT
  CAATAATGAT TCATAAAAAA TACAAAACCA CATGAGCTGA CACCCATTGT TCTAGGCTTT
  AGGTGAGTGT GAGAGTGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60744601	NES16381364	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51543077					SNP	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60744601	NES16381364	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65140809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi330	CpG island 330	1298 bp proximal
Cryga	crystallin, gamma A	within coordinates
Gm28845	predicted gene 28845	within coordinates
Tssr102	transcription start site region 102	998 bp downstream
Tssr7112	transcription start site region 7112	1252 bp downstream
Tssr7113	transcription start site region 7113	1134 bp downstream
Tssr7114	transcription start site region 7114	1120 bp downstream
Tssr7115	transcription start site region 7115	1108 bp downstream
Tssr7116	transcription start site region 7116	1046 bp downstream
Tssr7117	transcription start site region 7117	1007 bp downstream
Tssr7118	transcription start site region 7118	954 bp downstream
Tssr7119	transcription start site region 7119	1396 bp upstream
Tssr11968	transcription start site region 11968	1203 bp upstream
Tssr11969	transcription start site region 11969	1180 bp upstream
Tssr11970	transcription start site region 11970	1012 bp upstream
Tssr11971	transcription start site region 11971	988 bp upstream
Tssr11972	transcription start site region 11972	967 bp upstream
Tssr11973	transcription start site region 11973	1357 bp downstream
Tssr11974	transcription start site region 11974	1432 bp downstream
Tssr11975	transcription start site region 11975	1499 bp downstream
Tssr11976	transcription start site region 11976	1713 bp downstream