rs51543788 SNP Detail

Summary

• ID
  rs51543788
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106526507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAA TATATTGAGA GAGAGAGTCT
  T
  GCTCTGTAGC CCAGTTAGCC TTGAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136939183	ENSMUSSNP3065067	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323186536	CHEV_9_106551639	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51543788					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106526507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22271	CpG island 22271	1096 bp distal
Cpgi22272	CpG island 22272	1114 bp proximal
Grm2	glutamate receptor, metabotropic 2	within coordinates