rs51543895 SNP Detail

Summary

• ID
  rs51543895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110952275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGAAGG TGAATGTGGC
  TGGTCCTGGT GTGGAAACCT TTCAGAATGA CACCTTGGGA AGACTAGCAG AGGTGCTGCT
  TGTCTGGAGA GAAGGGGGCT CAGCCAGGGA CATGGGCACC TCTTTTTGTG GTGATAGGAC
  ATGGATGTCC GGGAGAGCAC AGGTACAGGT GATGGTGTTT GCACCCACTC TGATACACTT
  Y
  GCACATCACA GTAGGTGCGC TGTGACATCG TCGTCGATGC ACATGATACA TATCAGTCAC
  ATTTGCCCCA AGCCCTTCCT TGGTCCCTTC TAGTCCCAGC CATCCCCCTT CCCACCTCTC
  CCCCTTCTAC TTAATTGTTT TTCCTTTGAT TTTTACTTAT AGATGGGTGT TTGCTGGGAA
  TCAAACCTGA GTCCTCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61718116	NES17662549	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C		C	T	T	C		C
ss324159244	CHEV_12_112224051	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51543895					SNP	C	C	T	C	C	C	T	C	C	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61718116	NES17662549	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110952275 () rs orientation: forward

Symbol	Name	Function Class
Gm48630	predicted gene, 48630	within coordinates
Gm51959	predicted gene, 51959	within coordinates
Gm60603	predicted gene, 60603	within coordinates
Tssr3954	transcription start site region 3954	424 bp downstream
Tssr117807	transcription start site region 117807	1263 bp downstream
Tssr117808	transcription start site region 117808	1289 bp downstream